Flu cases on the rise in Sonoma County, and it has doctors concerned

The timing of this surge in the H3N2 virus — one of the two forms of Influenza A, the other being H1N1 — continues a pattern that has emerged during the coronavirus pandemic. It has become harder to predict outbreaks of communicable diseases.|

Dr. Gary Green has been an infectious disease specialist for 25 years. In that quarter century, he has never seen the flu on the rise this time of year — until now.

But it isn’t just the strange, unseasonal rise in influenza that has Green, a Sutter Health physician, concerned. The particular strain driving this spike is proving highly resistant to the 2021-22 flu vaccine. It’s coming during a period of high COVID transmission. And there is no clear picture on when either of the two viruses will peak.

Green was sufficiently alarmed that he sent out an alert this week to other Sutter physicians, advising them to be on guard.

“I want to give our doctors a heads-up, in case they want to do any surge planning,” he told The Press Democrat. “It’s like in the ocean, when you have sleeper waves. If you get two waves hitting at the same time, it’s not good. I’m afraid this could be a sleeper wave.”

The California Department of Public Health distributed a similar health advisory Tuesday.

The bizarre timing of this surge in the H3N2 virus — one of the two forms of Influenza A, the other being H1N1 — continues a pattern that has emerged during the coronavirus pandemic. It has become harder to predict outbreaks of communicable diseases.

A similar shift occurred in 2021 with respiratory syncytial virus, according to Dr. John Swartzberg, a professor emeritus of infectious diseases and vaccinology at the University of California, Berkeley School of Public Health.

“That’s primarily a condition of childhood, but older people can get it too, and it can be very serious when they do,” Swartzberg said. “RSV is typically a fall virus, but last year it came in late spring, early summer. One of the phenomena we’ve seen with this pandemic, it’s changed the epidemiology of other diseases. It’s changing the seasonality.”

Within the Sutter Health system, Green said, it’s considered “flu season” anytime more than 10% of all nasal and oral swabs come up positive for influenza. That season usually arrives in November, peaks in late January or early February and exits its “epidemic” phase by late March.

“It’s just sort of an endemic disease in summer or early fall,” Green added.

Except 2022 is breaking the mold. Instead of the sporadic cases of Influenza A that Sutter would typically be seeing this time of year — “like maybe 0.1% of our swabs,” Green said — the provider is finding positive rates of closer to 15% in the Bay Area. The numbers are reportedly higher than that in the San Joaquin Valley, a fact the CDPH alluded to in its advisory.

The current flu rate in Sonoma County is undetermined. Unlike the coronavirus, influenza isn’t a reportable condition unless a person is hospitalized and under the age of 65, according to Lucinda Gardner, an epidemiologist in the county’s Department of Health Services.

No one has proved any direct causal links for the current spike in Influenza A, but experts seem to agree it is related to changing behavior during the COVID pandemic.

The winter of 2020-21 saw “remarkably low incidence” of flu, Swartzberg said, because “the things that prevent COVID also prevent influenza.”

In other words, more people got their flu shots that year because they were freaked out about the new respiratory disease that had swept the planet. Many were masking and social distancing. Schools and churches stopped meeting in person.

A year later, Swartzberg said, health workers worried the 2021-22 season would explode with flu cases, especially if people let down their guard. Because so few had gotten the flu the previous winter, immunity would be down. Then the omicron COVID variant blew up, and most people tightened up their safety protocols again.

“But as omicron abated and the government got rid of a lot of mask mandates, our population started behaving like there was no pandemic anymore,” Swartzberg said. “Not only has omicron come back with a different variant, but we’re seeing the influenza we would have seen earlier this year.”

Making matters worse is the resistance the H3N2 virus is showing to the current flu vaccine.

Every year, Green said, doctors with the World Health Organization, the U.S. Centers for Disease Control and other major health organizations formulate a specific flu shot based on the latest research. It’s meant to be effective against both types of Influenza A and both types of Influenza B, but it doesn’t always work out that way.

“It’s really hit and miss,” Green said. “Probably every one to four years, one of the strains doesn’t match the vaccine. And sometimes it’s not the predominate strain, so you hardly notice it. This year, it’s sort of a perfect storm, where the strain that’s dominant is the one that isn’t affected much by the vaccine.”

The situation isn’t dire at the moment. Influenza positivity rates can routinely climb above 20% during flu season, and sometimes hit 40%. The Bay Area isn’t there, and hospitalizations remain low. Three patients are currently hospitalized with influenza in Sonoma County, with one in intensive care, according to the county’s data.

But even small numbers like that are uncommon, Green said. Anyway, he and others are mostly concerned about what’s coming next. Influenza A is still trending upward, and because of the way the pandemic has rejiggered the seasonal pattern, no one is comfortable guessing when the surge might peak.

COVID-19 cases remain high

At the same time, coronavirus rates are still high — currently 33.6 new cases per day per 100,000 people.

“Negative outcomes are still not at all like they were before, especially in January of 2021,” Gardner said. “But the case rate suggests widespread community transmission, so we’re seeing outbreaks congregant settings.”

The county did, on Monday, report the first COVID-related death of the month. A male between the ages of 80 and 90 died May 1. He was fully vaccinated but had underlying health conditions.

The coronavirus situation could get worse, too.

The original omicron variant has largely given way to its subvariant, known as BA.2. But that one is quickly being replaced by a further mutation of that one, called BA.2.12.1. According to a CDC report issued Tuesday, BA.2.12.1 made up nearly 48% of all samples analyzed in the U.S. the previous week . Swartzberg expects it to become America’s dominant strain in the next week or two.

“And BA.2.12.1 is approximately 30% more transmissible than BA.2,” he said. “And BA.2 is roughly 30% more transmissible than BA.1, which caused the January explosion. And that was 1.5 times more transmissible than delta. With BA.2.12.1 about to become the predominate subvariant in California, it means we’ll be dealing with the most transmissible form of SARS-CoV-2 we’ve ever dealt with.

“In fact, it’s approaching the transmissibility of measles, which is the most transmissible virus we know that affects human beings. So it’s ominous.”

Every source interviewed for this story agreed on one thing: the appropriate response. More than ever, we all need a return to vigilance, though the public health orders no longer demand it.

“It all points to us being careful,” Sonoma County Health Officer Dr. Sundari Mase said. “Masking is still a very effective method of limiting disease transmission. So I would highly recommend masking in indoor settings. And if you’re concerned about being at risk, avoid large gatherings.”

Green’s advice was similar.

“Be very careful about indoor activities, whether that’s Costco or TJ Maxx or a restaurant or a gym,” he said. “Wear masks indoors in public, and hand-washing is the key. My mom is 90, and she insists on going to church every day. But I insist she wear a mask.”

You can reach Phil Barber at 707-521-5263 or On Twitter @Skinny_Post.

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